Notes and Projects

Misc. computer notes

These are all the notes I've collected so far for getting things done on computers. I hope they can help you as well.


Fiji and Micro-Manager

Using and customizing Micro-Manager takes a while to learn. Here are the notes I have collected along the way.


pgFocus autofocus module

I've tested Karl Bellve's pgFocus open source and open hardware autofocus module. This module maintains the focus of a microscope overtime by sending a control signal that adjusts the position of the microscope objective. The control signal is generated in response to the displacement of an infrared beam hitting a linear light sensor array. The beam is reflected off of the coverslip/water interface.


Setting up OMERO

These are my notes on setting up the OMERO client-server software for microscopy data.


CellProfiler